PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_16601.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HB-other

Protein Properties

Length: 186aa MW: 21681.7 Da PI: 6.4346

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_16601.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.4	1.5e-20	65	121	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+ qVk+WFqN+R+++k+ Rsa1.0_16601.1_g00001.1 65 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 121 688999************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.2E-23	44	120	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.8E-20	52	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.471	62	122	IPR001356	Homeobox domain
SMART	SM00389	1.6E-18	63	126	IPR001356	Homeobox domain
Pfam	PF00046	4.0E-18	65	120	IPR001356	Homeobox domain
CDD	cd00086	3.31E-17	65	123	No hit	No description
PRINTS	PR00031	9.9E-5	93	102	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.9E-5	102	118	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MFEPNMLLAA MNNEDSNNYN HEINNNNNEG FLRDDEFDSA NTKSGSENQE GGSGNDQGPH 60 HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE LGLEPLQVKF WFQNKRTQMK 120 NHHERHENSH LRAENEKLRG DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL 180 REEVCG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_16601.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK316776	0.0	AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
GenBank	AY037177	0.0	AY037177.1 Arabidopsis thaliana At1g05230/YUP8H12_16 mRNA, complete cds.
GenBank	AY091690	0.0	AY091690.1 Arabidopsis thaliana At1g05230/YUP8H12_16 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487097.1	1e-131	PREDICTED: homeobox-leucine zipper protein HDG2-like
Refseq	XP_018487098.1	1e-131	PREDICTED: homeobox-leucine zipper protein HDG2-like
Refseq	XP_018487099.1	1e-131	PREDICTED: homeobox-leucine zipper protein HDG2-like
Swissprot	Q94C37	1e-120	HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBL	A0A078K102	1e-125	A0A078K102_BRANA; BnaCnng73480D protein (Fragment)
TrEMBL	A0A3P6FMZ2	1e-122	A0A3P6FMZ2_BRAOL; Uncharacterized protein
STRING	XP_010457604.1	1e-120	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM491	28	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.4	1e-104	homeodomain GLABROUS 2