PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_17216.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 175aa    MW: 18918.5 Da    PI: 11.1535
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_17216.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.34.7e-3771144274
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 
                              + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++  
  Rsa1.0_17216.1_g00001.1  71 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsV 144
                              67999***********************************************************8888844421 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3076151IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32777131IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MATTKKHEDQ RLRAVDLSVI NGVRSVETSK PFEVNNAVPK TEPSLESSSS QQLQVPSVSM  60
SLAPPSSTRP PLKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIRWL  120
LENAEPAIIA ATGTGTVPAI AMSVNGTLKI PTTTANGDSD VGDNPAKKRR KRPSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166170KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_17216.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895805e-99AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434255.11e-101PREDICTED: transcription factor TCP9
RefseqXP_018434269.11e-101PREDICTED: transcription factor TCP9-like
SwissprotO646471e-90TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A0D3BQ584e-96A0A0D3BQ58_BRAOL; Uncharacterized protein
STRINGBo4g024860.17e-97(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-87TCP family protein