PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_17301.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 206aa    MW: 23067.5 Da    PI: 11.1967
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_17301.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022132155123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              ++C+ Cg+ F+   +L++H    H
  Rsa1.0_17301.1_g00001.1 132 FPCTACGEIFPKTNLLEHHVAIkH 155
                              89*****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.12132160IPR007087Zinc finger, C2H2
PROSITE patternPS000280134155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAARKLGSLL RQHFFSLFFL FLGCFFFPKG GDLRQKRRKK KKLRTVTSGS GLSSSWTYLK  60
RVFLSTTRIS KSRNQTHPNG PSTTLTSARS SQNSLVTLVQ PDPETRTENR FSDISSSDSP  120
LFLPLRNNNE IFPCTACGEI FPKTNLLEHH VAIKHAVSEL ADGESSTNIV KIIFKSGWLG  180
EQQGNNSKIP AIHRILKIHN SPKILA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541KRRKKKK
23642RRKKKKL
33743RKKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_17301.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325770.0AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433029.11e-112PREDICTED: uncharacterized protein LOC108805604
TrEMBLA0A078I7S82e-98A0A078I7S8_BRANA; BnaA05g12370D protein (Fragment)
TrEMBLA0A3P5YSP22e-98A0A3P5YSP2_BRACM; Uncharacterized protein
STRINGBra018369.1-P4e-99(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-62C2H2 family protein