PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_17339.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 169aa MW: 17995.9 Da PI: 7.07

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_17339.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	48.3	3e-15	3	53	50	100
DUF260 50 peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 e++r da++slvyeA+ r+rdP+yG++g i++lq+++++l++el ++++e Rsa1.0_17339.1_g00001.1 3 GESQRGDAANSLVYEANLRLRDPIYGCMGAISTLQHHIQSLQSELTTVRTE 53 5789******************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.478	1	54	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.2E-14	2	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
EVGESQRGDA ANSLVYEANL RLRDPIYGCM GAISTLQHHI QSLQSELTTV RTEILRHKYR 60 EAATITSLQQ NNNNFNNNTT SVSDHAALAA SILLPPPPPP PPPPRPPRLL SSRPAAPPTP 120 PASLPSPSMV VSSSSSNSSA TNSIYNPPPS SAAGYSNSLS SDNNVHYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-15	6	65	63	122	LOB family transfactor Ramosa2.1
5ly0_B	2e-15	6	65	63	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_17339.1_g00001.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433132.1	9e-74	PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 13
Swissprot	Q9AT61	6e-57	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A397ZM35	7e-64	A0A397ZM35_BRACM; Uncharacterized protein
TrEMBL	A0A397ZNW5	8e-64	A0A397ZNW5_BRACM; Uncharacterized protein
STRING	Bo4g059520.1	1e-61	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-41	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]