PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_17409.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 273aa    MW: 30627.9 Da    PI: 10.1951
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_17409.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind342.69.4e-10512731301
                GAGA_bind   1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerd...maflqrdkalaernkalver 77 
                              mdddg+  rn+gyyepa  +s+k nlglqlm +i +r++k+    r+ nl ++++ ++++++    m++    +++++       +
  Rsa1.0_17409.1_g00001.1   1 MDDDGF--RNWGYYEPAaaTSFKGNLGLQLMPTI-DRNTKPflpgRDPNL-MIGQTGSYHHHPephMSY----NWINQ-------H 71 
                              99**99..9******99899**************.9**************.**********99555666....*****.......7 PP

                GAGA_bind  78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163
                              ++k++++l+v+++     p++ +vl++t+s  s+++    +l+      ++++++e++p++++++ +++kk+k +++ +  +k+kk
  Rsa1.0_17409.1_g00001.1  72 KDKFFNMLPVTTT-----PNYGNVLPQTSSSPSMHM----NLH------HHHHQTEEHPVKCEPDIVETKKRKPNSKAGGATKAKK 142
                              89*******9986.....9***************99....332......2456677889999999999999999899999999999 PP

                GAGA_bind 164 akkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249
                               +k+k++     ++++++   +r+k  kks dlv+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stk
  Rsa1.0_17409.1_g00001.1 143 PRKPKEE-----NDNNTNV--SRVKPAKKSFDLVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTK 221
                              9999993.....3344444..689************************************************************** PP

                GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                              rrgaRi+grKmSqgafkk+LekLa++G++++np+DLk+hWA+HGtnkfvtir
  Rsa1.0_17409.1_g00001.1 222 RRGARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 273
                              ***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.5E-1641273IPR010409GAGA-binding transcriptional activator
PfamPF062178.8E-951273IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATSF KGNLGLQLMP TIDRNTKPFL PGRDPNLMIG QTGSYHHHPE  60
PHMSYNWINQ HKDKFFNMLP VTTTPNYGNV LPQTSSSPSM HMNLHHHHHQ TEEHPVKCEP  120
DIVETKKRKP NSKAGGATKA KKPRKPKEEN DNNTNVSRVK PAKKSFDLVI NGVNMDISGL  180
PVPVCTCTGA PQQCYRWGCG GWQSACCTTN ISMHPLPMST KRRGARISGR KMSQGAFKKV  240
LEKLASDGFN FGNPIDLKSH WARHGTNKFV TIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_17409.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433121.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
RefseqXP_018433122.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9LDE21e-163BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A3P5Y9300.0A0A3P5Y930_BRACM; Uncharacterized protein
STRINGBo8g106640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-154basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]