PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_17750.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 215aa MW: 23363.8 Da PI: 8.3664

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_17750.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.8	1.2e-40	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+Ca++C+++pyf ++p kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i +lqqq Rsa1.0_17750.1_g00001.1 41 PCAACKLLRRRCAQECPFSPYFSPHEPLKFASVHKVFGASNVSKMLMEVPEGHRADAANSLVYEANVRLRDPVYGCMGAIVALQQQ 126 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 ++ l+ael ++++e Rsa1.0_17750.1_g00001.1 127 VQALQAELTAVRSE 140 *******99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.878	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.4E-41	41	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
ERLESEIGKR NKREADALPH QMAGIRRPIS GPLGALNTIT PCAACKLLRR RCAQECPFSP 60 YFSPHEPLKF ASVHKVFGAS NVSKMLMEVP EGHRADAANS LVYEANVRLR DPVYGCMGAI 120 VALQQQVQAL QAELTAVRSE ILKYKQREAV ATLIVPSNSQ VAGYHNSGDV SVITLPPQTP 180 STPPQPTAPL PDPPPPSSCV YSQPTTRALQ YGEIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-41	41	144	11	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-41	41	144	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_17750.1_g00001.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438046.1	1e-140	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-111	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A087H476	1e-126	A0A087H476_ARAAL; Uncharacterized protein
STRING	A0A087H476	1e-127	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-105	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]