PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_17887.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 216aa    MW: 24093.1 Da    PI: 10.8978
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_17887.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.7e-20134168135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++C +tkTp+WR+gp+g+ktLCnaCG+++r+ +l
  Rsa1.0_17887.1_g00001.1 134 CTHCESTKTPQWREGPNGPKTLCNACGVRFRSGRL 168
                              *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-15128190No hitNo description
SMARTSM004014.6E-18128182IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.925132164IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.3E-15132165IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.39E-16133182No hitNo description
PfamPF003209.2E-18134168IPR000679Zinc finger, GATA-type
PROSITE patternPS003440134159IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
KQLGGISSTV DTSLPDVKVS KLFQSSSPVS VLENNAANGS AASFQNQNRA QRLAFPVKGI  60
RSKRKRPSIP TFLSRHSFLS EMLERKFALD DDSDSEDTYL SSESSAKRRR KKKNSNVSHS  120
PEPFSADGTV VRKCTHCEST KTPQWREGPN GPKTLCNACG VRFRSGRLLP EYRPASSPTF  180
IPTVHSNSHR KIIEMRRKDE EGQFGTGMAR GFRYRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112KRRRKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_17887.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441963.11e-157PREDICTED: GATA transcription factor 11-like
SwissprotQ6DBP82e-71GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A0D3BU681e-120A0A0D3BU68_BRAOL; Uncharacterized protein
STRINGBo4g071630.11e-121(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-66GATA transcription factor 11