PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_18368.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 254aa    MW: 27425.6 Da    PI: 7.1908
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_18368.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005584106123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+++F++   L  H  +H
  Rsa1.0_18368.1_g00001.1  84 YECKTCNRTFPSFQALGGHRASH 106
                              99**********99999998887 PP
2zf-C2H213.60.00021160182123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg  F++   L  H+r+H
  Rsa1.0_18368.1_g00001.1 160 HECSICGSEFTSGQALGGHMRRH 182
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-1383108IPR007087Zinc finger, C2H2
SuperFamilySSF576679.67E-983106No hitNo description
PROSITE profilePS5015710.55484111IPR007087Zinc finger, C2H2
SMARTSM003550.05284106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576679.67E-9155182No hitNo description
Gene3DG3DSA:3.30.160.608.4E-4158182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-11159183IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743160182IPR007087Zinc finger, C2H2
SMARTSM003550.019160182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
TTITSTSSSA GGERTASDGY NSVVSSPVTT TDCTEEEEDM AICLIMLARG AAPSPLPDLK  60
NSIKTDKSLH LKASSTENSS FYVYECKTCN RTFPSFQALG GHRASHKKPR ASIDEKAKVP  120
LMQLKSSASD EGQKSHFKVS GSALASKASN IITSKANKVH ECSICGSEFT SGQALGGHMR  180
RHRTVTNVVS PVTTAEVSRN STEEETENLS RSMEQRKYLP LDLNLPAPED DLRESKFQGI  240
VFSATTPALI DCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_18368.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0058511e-145AC005851.3 Arabidopsis thaliana chromosome 2 clone F24D13 map B68, complete sequence.
GenBankAC0062021e-145AC006202.4 Arabidopsis thaliana chromosome 2 clone T3B23 map mi54, complete sequence.
GenBankAK1754931e-145AK175493.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-92-D09.
GenBankAK2298121e-145AK229812.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-88-O10.
GenBankCP0026851e-145CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439142.10.0PREDICTED: zinc finger protein ZAT5
SwissprotQ681X41e-132ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0D3BU871e-159A0A0D3BU87_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C4H01e-159A0A3P6C4H0_BRAOL; Uncharacterized protein
STRINGBo4g071820.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-124C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]