PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_18874.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 53aa    MW: 6116.21 Da    PI: 10.9191
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_18874.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.69.5e-201046135
                     GATA  1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C+  nC++ +Tp+WRrgp g+ktLCnaCG+++rk+++
  Rsa1.0_18874.1_g00001.1 10 CTnmNCNAVDTPMWRRGPLGPKTLCNACGIKFRKEEE 46
                             66569*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-6653IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-12847No hitNo description
PfamPF003203.8E-171046IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-141345IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.37E-81443No hitNo description
PROSITE profilePS5011411.4241442IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
GGRIGWLRKC TNMNCNAVDT PMWRRGPLGP KTLCNACGIK FRKEEERMSK RTF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_18874.1_g00001.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490247.11e-32PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT451e-22GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A078H4R71e-25A0A078H4R7_BRANA; BnaC03g41730D protein
TrEMBLA0A0D3BCG11e-25A0A0D3BCG1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B4B71e-25A0A3P6B4B7_BRAOL; Uncharacterized protein
TrEMBLM4CC711e-25M4CC71_BRARP; Uncharacterized protein
STRINGBra001801.1-P2e-26(Brassica rapa)
STRINGBo3g076170.12e-26(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.15e-25GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]