PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_19218.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 234aa    MW: 25898.3 Da    PI: 4.5742
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_19218.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2591.7e-791224142374
                     GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserde 226
                              +R+Tgvg       + ++++g++La++A+++gv+fef+ l++++l+dle+e+++++p  E+++Vn+v++lh ll++++s+e+    
  Rsa1.0_19218.1_g00001.1   1 FRLTGVGG------DGVQQLGWKLAQLAQAIGVEFEFKGLTVESLTDLEPEMFETRPeSETVVVNSVFELHPLLARPGSIEK---- 76 
                              69999999......99*****************************************9************************.... PP

                     GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312
                              +L++vk ++P +v+vveqea+hn++ Flerf eal+yys+lfdsle ++   s++r + E+  lgr+i nvva+eg++r+erhet+
  Rsa1.0_19218.1_g00001.1  77 LLETVKAVRPSIVTVVEQEANHNGAVFLERFNEALHYYSSLFDSLEDGVMIPSRDRLMSEAY-LGRQILNVVAAEGTDRIERHETM 161
                              *************************************************9999999888777.*********************** PP

                     GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +Wr+r+++aGF pv+l+++a kqa+lll+  + +dgyrvee++gsl+l W+++pL+++SaW+
  Rsa1.0_19218.1_g00001.1 162 DQWRKRMGSAGFDPVSLGSDAFKQASLLLALSGgGDGYRVEENEGSLMLAWQTKPLIAASAWK 224
                              **************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.8E-771224IPR005202Transcription factor GRAS
PROSITE profilePS5098534.0921203IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
FRLTGVGGDG VQQLGWKLAQ LAQAIGVEFE FKGLTVESLT DLEPEMFETR PESETVVVNS  60
VFELHPLLAR PGSIEKLLET VKAVRPSIVT VVEQEANHNG AVFLERFNEA LHYYSSLFDS  120
LEDGVMIPSR DRLMSEAYLG RQILNVVAAE GTDRIERHET MDQWRKRMGS AGFDPVSLGS  180
DAFKQASLLL ALSGGGDGYR VEENEGSLML AWQTKPLIAA SAWKVSDVAA EWRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-312223161378Protein SCARECROW
5b3h_A7e-312223160377Protein SCARECROW
5b3h_D7e-312223160377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Its activity may be regulated by phytohormones such as auxin and ethylene (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_19218.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442110.11e-168PREDICTED: DELLA protein RGL3-like
SwissprotQ9LF531e-140RGL3_ARATH; DELLA protein RGL3
TrEMBLM4DBW31e-156M4DBW3_BRARP; Uncharacterized protein
STRINGBra013973.1-P1e-157(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.11e-131RGA-like protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wild M,Achard P
    The DELLA protein RGL3 positively contributes to jasmonate/ethylene defense responses.
    Plant Signal Behav, 2013. 8(4): p. e23891
    [PMID:23425858]
  3. Shi H,Wei Y,Wang Q,Reiter RJ,He C
    Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis.
    J. Pineal Res., 2016. 60(3): p. 373-9
    [PMID:26887824]
  4. Shi H,Liu W,Wei Y,Ye T
    Integration of auxin/indole-3-acetic acid 17 and RGA-LIKE3 confers salt stress resistance through stabilization by nitric oxide in Arabidopsis.
    J. Exp. Bot., 2017. 68(5): p. 1239-1249
    [PMID:28158805]
  5. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]