PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_19328.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 103aa    MW: 11528 Da    PI: 4.1087
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_19328.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind85.76.3e-272886260
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
             HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                             Fl+k+y++++d+ ++e++sws+ +nsfvv++ +efak+ LpkyFkh+nf+SFvRQLn+Y
  Rsa1.0_19328.1_g00001.1 28 FLSKTYDMVDDPMTDEVVSWSSGNNSFVVWNVTEFAKQFLPKYFKHNNFSSFVRQLNTY 86
                             9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.7E-282286IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.48E-242387IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-2324100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-152851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.1E-222886IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-156678IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-157991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MGSICESVPT VNSSSPSATV VVNSIPPFLS KTYDMVDDPM TDEVVSWSSG NNSFVVWNVT  60
EFAKQFLPKY FKHNNFSSFV RQLNTYVSID QSIVFDVPEE CLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-2015921798Heat shock factor protein 1
5d5v_B6e-2015921798Heat shock factor protein 1
5d5v_D6e-2015921798Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_19328.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891853e-77AC189185.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491796.12e-53PREDICTED: heat stress transcription factor A-1e-like
SwissprotQ9SCW52e-43HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A397ZZQ72e-45A0A397ZZQ7_BRACM; Uncharacterized protein
STRINGBra001071.1-P5e-46(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.17e-46heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]