PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_20910.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C3H

Protein Properties

Length: 48aa MW: 5151.81 Da PI: 7.3435

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_20910.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.6e-08	14	37	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H Rsa1.0_20910.1_g00001.1 14 KSKPCTKFFSTSGCPFGENCHFLH 37 7899******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.84	12	40	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.63E-8	13	38	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.4E-9	14	37	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.9E-6	14	37	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 48 aa Download sequence Send to blast
MFGTEMESTG LGSKSKPCTK FFSTSGCPFG ENCHFLHYVP GGYNAVAQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_20910.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353531	2e-52	AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019096801.1	3e-25	PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1
Swissprot	Q9C7C3	3e-23	C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBL	A0A3N6SU46	3e-24	A0A3N6SU46_BRACR; Uncharacterized protein
STRING	Bra001436.1-P	3e-23	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	1e-25	C3H family protein

Publications ? help Back to Top
Yan Z,Jia J,Yan X,Shi H,Han Y Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence. Plant Mol. Biol., 2017. 95(6): p. 549-565 [PMID:29076025]