PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_21047.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 257aa MW: 28525 Da PI: 8.1872

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_21047.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.5	1.1e-27	187	244	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy WrKYGqK+vk+se+ rsY +Ct+++C +kk ve+++ d++v+ei+Y+g Hnh+k Rsa1.0_21047.1_g00001.1 187 NDGYGWRKYGQKQVKKSENLRSYVKCTYPNCVSKKIVETAS-DGQVTEIIYKGGHNHPK 244 8*************************************9.*************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-22	182	245	IPR003657	WRKY domain
SuperFamily	SSF118290	6.8E-21	184	245	IPR003657	WRKY domain
SMART	SM00774	5.9E-26	186	244	IPR003657	WRKY domain
Pfam	PF03106	2.9E-20	187	243	IPR003657	WRKY domain
PROSITE profile	PS50811	18.647	187	245	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSSTSFTDLL ASSGVDCYEQ DEDFLGGFYP ERTGSGLPKS KTAQPPPLPI SQPSHGFAFS 60 ELLDSPLLLS SSSHSLISPT TGAFPYQCFN GTNNHSEFPW QLQTQPQPPN ASSVMCFPLP 120 FSETIYSSLV LKPKLASFTL SLYIQALPET YVVQDLQKKQ EDPVPREFAA DRQVKTPSYT 180 VVRRNFNDGY GWRKYGQKQV KKSENLRSYV KCTYPNCVSK KIVETASDGQ VTEIIYKGGH 240 NHPKPEFTKR PSGSSSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250\|UniProtKB:Q9SI37, ECO:0000269\|PubMed:18839316, ECO:0000269\|PubMed:19125253, ECO:0000269\|PubMed:21336597}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_21047.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269\|PubMed:18839316, ECO:0000269\|PubMed:19125253}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430043	1e-137	KF430043.1 Brassica rapa WRKY transcription factor 25 (WRKY25) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018441600.1	0.0	PREDICTED: probable WRKY transcription factor 25 isoform X1
Swissprot	O22921	3e-97	WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBL	A0A3N6TRK2	1e-121	A0A3N6TRK2_BRACR; Uncharacterized protein
STRING	Bra018325.1-P	1e-120	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30250.1	1e-97	WRKY DNA-binding protein 25

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]