PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_22149.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 136aa    MW: 15389.7 Da    PI: 10.1317
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_22149.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.11.8e-161050242
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             +i n+s r++t+ kR+ g+lKKA E+ +LC+++v  ii+s+
  Rsa1.0_22149.1_g00001.1 10 FIINNSSRKTTYKKRKRGLLKKAREIFTLCGINVGAIIYSP 50
                             78899**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.03149IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-21160IPR002100Transcription factor, MADS-box
CDDcd002661.86E-15283No hitNo description
SuperFamilySSF554555.89E-23290IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-10323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTRSKVKLAF IINNSSRKTT YKKRKRGLLK KAREIFTLCG INVGAIIYSP YDPTPEVWPS  60
VDGMNQVITT FRNLPEIDRH NNMIGQLTFL AGGHNNPALA RDLNDLGYLV DQYLNRLNRR  120
IQILEGGSDV EIGESL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_22149.1_g00001.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6084921e-68AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444906.12e-74PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-35AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0D3CMG83e-44A0A0D3CMG8_BRAOL; Uncharacterized protein
TrEMBLA0A3N6SXQ43e-44A0A3N6SXQ4_BRACR; Uncharacterized protein
TrEMBLA0A3P6FJD52e-44A0A3P6FJD5_BRAOL; Uncharacterized protein
STRINGBo5g145000.15e-45(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-34AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]