PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_22404.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 124aa MW: 13184.8 Da PI: 5.5313

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_22404.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	47.3	5.8e-15	1	45	56	100
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 da++slvyeA++r+rdPvyG++g i++lqqq++ l++el ++++e Rsa1.0_22404.1_g00001.1 1 DAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQVELTAIRSE 45 689************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.1E-12	1	43	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	10.373	1	46	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
DAANSLVYEA NVRLRDPVYG CMGAISALQQ QVQALQVELT AIRSEILKYK QREAVATLIA 60 PSNSQVAAGF HNSAGVFVIA PPPQTPSTPP QPSAAHPPPP PPSSCVFSQP TYGDIENEHN 120 SYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-14	1	49	66	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-14	1	49	66	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_22404.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254595	1e-104	AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018466729.1	5e-84	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	1e-42	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A087H476	9e-59	A0A087H476_ARAAL; Uncharacterized protein
STRING	A0A087H476	1e-59	(Arabis alpina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-41	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]