PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_22859.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 216aa    MW: 25395.8 Da    PI: 8.9321
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_22859.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.95e-20151634128
                      NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk... 79 
                              G++F+P d+el++eyL +k+egk+  +   i+  d+y+ ePw L++ + +  +++ewy+F++r + ++     gk+++r +t+   
  Rsa1.0_22859.1_g00001.1  15 GIQFQPYDDELINEYLIPKLEGKPRGE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYFVTRTQLSKkkigCGKKAKRkITRnnd 97 
                              99**********************655...9999**********86444444889*****99977655334446676664444556 PP

                      NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfy......kgrapkge...........ktdWvmheyrl 128
                              sg Wka  k  ++++k  + ++g  +tL+f       k+++++g            +++W+m ey l
  Rsa1.0_22859.1_g00001.1  98 SGSWKANAK-GDIKDKeAKMVIGEHQTLAFVksevnnKKKQKSGDstscdvvvpgsESSWIMTEYML 163
                              9****9987.67777646778**********666655223333324444455555589999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.93612181IPR003441NAC domain
SuperFamilySSF1019413.4E-2113179IPR003441NAC domain
PfamPF023655.8E-1515162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MYEYDMYEYN DEDGGIQFQP YDDELINEYL IPKLEGKPRG EITMKDVYSK EPWLLDHPMG  60
SFFKKNEWYY FVTRTQLSKK KIGCGKKAKR KITRNNDSGS WKANAKGDIK DKEAKMVIGE  120
HQTLAFVKSE VNNKKKQKSG DSTSCDVVVP GSESSWIMTE YMLPEIEDKF RELVICKIHV  180
IENSNKKKKD DRHEASTSSY HHQHTTRIQF ILRRTY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_22859.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453519.11e-144PREDICTED: uncharacterized protein LOC108824593
TrEMBLA0A0D3ECL51e-108A0A0D3ECL5_BRAOL; Uncharacterized protein
TrEMBLA0A397XK521e-107A0A397XK52_BRACM; Uncharacterized protein
STRINGBo9g135820.11e-108(Brassica oleracea)
STRINGBo9g135840.11e-109(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.23e-14NAC domain containing protein 35