PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_23065.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 318aa MW: 34842.8 Da PI: 6.7776

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_23065.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.6e-29	253	303	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek i le+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ Rsa1.0_23065.1_g00001.1 253 EKIIGLEVLQQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 303 7889*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.722	242	318	IPR003035	RWP-RK domain
Pfam	PF02042	6.3E-25	256	303	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
PLALSWAPCD RQGKGGSRHS DENFSQCVST IDSACFVLDE ESKCFLEACS EYHLLQGEGM 60 VGKAFEETKL FFVPEVTIFS KTNYALAHHA KVSGLHAALA VPLKGKSNGL VEFVLEFFFP 120 KSCIDAEAKQ DMLKSLSVTL QQDFKSSNLV IDKDLELEVV LPDREDMVLL ETEESLREVH 180 MQDSSSMIKA NEKGKDPIDE SKISSGLDNS QLDPIPSGGC RVDAGPSTEP ASTGGGSMLG 240 SRRPGDKRRS KTEKIIGLEV LQQYFAGSLK DAAKSIGVCP TTLKRICRHH GITRWPSRKI 300 KKVGHSLKKL QVVMDSVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_23065.1_g00001.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT000911	2e-90	BT000911.1 Arabidopsis thaliana clone C105242 unknown protein (At2g17150) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018492394.1	0.0	PREDICTED: protein NLP1-like
Swissprot	Q8H111	1e-168	NLP1_ARATH; Protein NLP1
TrEMBL	M4CZL2	0.0	M4CZL2_BRARP; Uncharacterized protein
STRING	Bra009659.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	1e-170	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]