PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_23355.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 240aa    MW: 27419.9 Da    PI: 9.4243
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_23355.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.3e-1863108148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  Rsa1.0_23355.1_g00001.1  63 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 108
                              89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.4843957IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.4E-104369IPR009057Homeodomain-like
SuperFamilySSF466892.59E-2243113IPR009057Homeodomain-like
PROSITE profilePS5129427.81458112IPR017930Myb domain
SMARTSM007172.2E-1762110IPR001005SANT/Myb domain
PfamPF002492.6E-1663107IPR001005SANT/Myb domain
CDDcd001674.63E-1365108No hitNo description
Gene3DG3DSA:1.10.10.607.1E-2170109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
TVDRTGGHPL GQLCPHVRRS KMGFRSESVR FEGGGRNIRI GLNRTGKSCR LRWVNYLHPG  60
LKRGKMTPQE ERLVLELHAK WGNRWSKIAR KLPGRTDNEI KNYWRTHMRK KAQEKKRHMS  120
PTSSSSNCCS SSMTTAATQD TGGSNGKMDQ ECEDGYYSMD DIWREIDQSG ANIIKPVKDI  180
YYSEQSCYLN FPPLASPAWE SSMESIWNMD ADDSKMSCFA IDQFPLSFEH GRSSPWSSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-184411237105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-174411291159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-174411291159MYB PROTO-ONCOGENE PROTEIN
1h8a_C6e-184411260128MYB TRANSFORMING PROTEIN
1mse_C4e-184411237105C-Myb DNA-Binding Domain
1msf_C4e-184411237105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_23355.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0752530.0DQ075253.1 Arabidopsis thaliana MYB transcription factor MYB59-2 (At5g59780) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472597.11e-164PREDICTED: transcription factor MYB59 isoform X2
SwissprotQ4JL841e-123MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A398A1C31e-140A0A398A1C3_BRACM; Uncharacterized protein
STRINGBostr.26833s0259.1.p1e-137(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.21e-120myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]