PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_23760.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 71aa    MW: 7545.56 Da    PI: 10.7496
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_23760.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.7e-123762127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                             +kt+ C +f++ G C +GdrC+FaHg+
  Rsa1.0_23760.1_g00001.1 37 FKTKMCERFSK-GSCTFGDRCHFAHGE 62
                             69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.4E-173166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-93666IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.4463663IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-63662IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-83762IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
ASVMVRELIG RLNSAARRPP GGGGIGSEGK PHPGSNFKTK MCERFSKGSC TFGDRCHFAH  60
GEAELRRSGI S
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_23760.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535311e-69AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491218.16e-44PREDICTED: zinc finger CCCH domain-containing protein 36-like
SwissprotQ9C7C32e-30C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A0D3BAW52e-41A0A0D3BAW5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ALD02e-41A0A3P6ALD0_BRAOL; Uncharacterized protein
STRINGBo3g064770.13e-42(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-26C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]