PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_24580.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 133aa    MW: 15144.5 Da    PI: 10.0861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_24580.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.5e-112672455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                              h ++Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  Rsa1.0_24580.1_g00001.1 26 EHVIAERKRREKLSEKFIALSALLPGL-----KKADKITVLDDAISRLKQLQ 72
                             699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-162088IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.5262271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-82672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-162687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-92776No hitNo description
SMARTSM003531.6E-122877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDQLVRCGTK QKSCSSAKRS PAFAKEHVIA ERKRREKLSE KFIALSALLP GLKKADKITV  60
LDDAISRLKQ LQEQIRKLKE EKEATRHMES MILVKKSKVF FDEKTSLPSS SCSDNEQFDQ  120
PLPQIEAKVA QNE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13035ERKRRE
23136RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_24580.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437719.11e-85PREDICTED: transcription factor bHLH19-like
SwissprotQ1PF169e-63BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A078IUB35e-72A0A078IUB3_BRANA; BnaC08g49180D protein
STRINGBo8g100890.12e-72(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.14e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]