PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_24891.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WOX

Protein Properties

Length: 105aa MW: 12015.6 Da PI: 10.2626

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_24891.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.9	2.3e-20	9	70	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t eq++ L +lF+ r+ps++++++++++l +++ ++V++WFqN++a+e++ Rsa1.0_24891.1_g00001.1 9 KCGRWNPTGEQVKLLTDLFNAgLRTPSTDQIQKISTELsvygKIESKNVFYWFQNHKARERQ 70 568***************99************************************97 PP
2	Wus_type_Homeobox	113.1	1.5e-36	9	72	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+Pt eQ+k+L++l+++GlrtP++++iq+i++eL+ yGkie+kNVfyWFQN+kaRerqk+ Rsa1.0_24891.1_g00001.1 9 KCGRWNPTGEQVKLLTDLFNAGLRTPSTDQIQKISTELSVYGKIESKNVFYWFQNHKARERQKR 72 678***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.544	6	71	IPR001356	Homeobox domain
SMART	SM00389	4.5E-4	8	75	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-17	10	70	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.85E-12	11	74	IPR009057	Homeodomain-like
CDD	cd00086	3.11E-4	12	72	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-8	12	70	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MGGGGTGTKC GRWNPTGEQV KLLTDLFNAG LRTPSTDQIQ KISTELSVYG KIESKNVFYW 60 FQNHKARERQ KRRKISTVDF DHCQETNLSL PHRDKPCHYR PPPKG

Functional Description ? help Back to Top
Source	Description
UniProt	Potential transcription factor that plays a central role during developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_24891.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189201	1e-121	AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018469689.1	9e-75	PREDICTED: WUSCHEL-related homeobox 7-like
Swissprot	Q9FFK0	2e-50	WOX7_ARATH; WUSCHEL-related homeobox 7
TrEMBL	A0A078FP51	4e-57	A0A078FP51_BRANA; BnaC02g02200D protein
TrEMBL	A0A0D3AHX1	4e-57	A0A0D3AHX1_BRAOL; Uncharacterized protein
STRING	Bo2g007050.1	7e-58	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4014	28	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05770.1	1e-52	WUSCHEL related homeobox 7

Publications ? help Back to Top
Conte MG,Gaillard S,Droc G,Perin C Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants. BMC Genomics, 2008. 9: p. 183 [PMID:18426584] Kong D,Hao Y,Cui H The WUSCHEL Related Homeobox Protein WOX7 Regulates the Sugar Response of Lateral Root Development in Arabidopsis thaliana. Mol Plant, 2016. 9(2): p. 261-270 [PMID:26621542] Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]