PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_25257.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 168aa MW: 18584.9 Da PI: 8.6635

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_25257.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.7	1.1e-06	140	162	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+ + +L +Hi + H Rsa1.0_25257.1_g00001.1 140 VCPKCSKGFREPGELLKHIDKdH 162 7******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	6.28E-11	13	69	No hit	No description
Gene3D	G3DSA:4.10.1110.10	7.1E-10	15	71	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS51039	8.051	22	75	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	3.0E-8	25	65	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.0047	25	66	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS50157	9.099	139	167	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	141	162	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
ITWEKHVNTD CDPSNYEKTV KKKKCPVPRC RELLTFSNTI KCRDCSIDHC LKHRFGPDHS 60 CSGPKKLESS FSFMGFLSTA TNTKETPASS SSRWSSLLAS AEASIRELGN DISQKLQFSS 120 GGDGSSEKTQ ERNGKVTVDV CPKCSKGFRE PGELLKHIDK DHRGTSIA

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_25257.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018442767.1	1e-119	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
Swissprot	Q9SCM4	6e-96	SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBL	A0A078J5Y9	1e-107	A0A078J5Y9_BRANA; BnaCnng38560D protein
TrEMBL	A0A0D3CUC6	1e-107	A0A0D3CUC6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6H848	1e-107	A0A3P6H848_BRAOL; Uncharacterized protein
STRING	Bo6g072950.1	1e-108	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3908	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57480.1	2e-90	C2H2 family protein

Publications ? help Back to Top
Dixit A, et al. A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses. Plant Cell Environ., 2018. 41(5): p. 1171-1185 [PMID:29194659]