PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_26083.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family FAR1
Protein Properties Length: 122aa    MW: 13823.3 Da    PI: 4.9867
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_26083.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.35e-0881121244
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreee 44 
                               Y++Y+ + GF++r++++ k+  n++ ++  +vC keg+r+e 
  Rsa1.0_26083.1_g00001.1  81 AYRKYGGDHGFNIRRQRTVKR--NNKLVRMVYVCAKEGFRQEP 121
                              59************9987665..8889*************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-581121IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MENSHLSGQT IALASQDESN LQASGETSLL SQNSDELLAE IKDASLSDDN ASVSDFDEEE  60
DITTMRIIFR LKISDESAYK AYRKYGGDHG FNIRRQRTVK RNNKLVRMVY VCAKEGFRQE  120
PK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_26083.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435986.12e-59PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0D2ZVX23e-44A0A0D2ZVX2_BRAOL; Uncharacterized protein
TrEMBLA0A0D3AAX74e-45A0A0D3AAX7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BEF33e-44A0A3P6BEF3_BRAOL; Uncharacterized protein (Fragment)
STRINGBo02148s010.15e-45(Brassica oleracea)
STRINGBo1g099910.17e-46(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM6200613