PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_26815.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 264aa    MW: 29854.4 Da    PI: 9.0363
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_26815.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05147169123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ Cgk+F++   L  H  +H
  Rsa1.0_26815.1_g00001.1 147 FTCETCGKVFKSYQALGGHRASH 169
                              89***********9999998887 PP
2zf-C2H210.80.0016201223123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+C ++F +   L  H r+H
  Rsa1.0_26815.1_g00001.1 201 HECPICLRVFASGQALGGHKRSH 223
                              79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.02147169IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.91E-8147169No hitNo description
PROSITE profilePS5015711.053147174IPR007087Zinc finger, C2H2
PfamPF139124.1E-11147171IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
SuperFamilySSF576675.91E-8196223No hitNo description
SMARTSM003550.23201223IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058201223IPR007087Zinc finger, C2H2
PfamPF139124.3E-12201223IPR007087Zinc finger, C2H2
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MRSHVPSLHK FSIQEEEGER ASQLNDETES DVSSSSSMMD PKVANESETE SSSSMKITNL  60
TRKRSKRTRK LETSATKKRK TSQLGYKTEP ECEPPYSSTS DTTRDEDLAF CLMLLSRDRW  120
KNRTSSKEVV EEISTEGHNK WSKKGRFTCE TCGKVFKSYQ ALGGHRASHK KNRVSNKTEQ  180
RSETEFENVV VVVAAAEKRI HECPICLRVF ASGQALGGHK RSHGIGNLSV DHHQVRVESV  240
KQKRMVDLNL PAPTHEEEVS IVFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16179RKRSKRTRKLETSATKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_26815.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443593.10.0PREDICTED: zinc finger protein ZAT9-like, partial
SwissprotQ9M2021e-108ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A3P6FVQ51e-140A0A3P6FVQ5_BRAOL; Uncharacterized protein
STRINGBo6g077190.11e-140(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-89C2H2-like zinc finger protein