PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_27164.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 224aa MW: 24877.8 Da PI: 8.0114

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_27164.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F++ +L Hir H Rsa1.0_27164.1_g00001.1 6 HVCKFCNKKFPSGKSLGGHIRIH 28 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.9E-7	3	31	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.55E-7	3	32	No hit	No description
Pfam	PF13912	3.5E-6	6	24	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.427	6	33	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MMEKKHVCKF CNKKFPSGKS LGGHIRIHTN EYSVASVRFN ANNPTKQEQQ QLCCRGCGGS 60 NHMDCHCVGE KMVMMDTRSH TETTRSKKVM KQSESFSSSS ISEIDQEHKD TALSLMMMSI 120 DSKGHNLVVN SLAESSSENT SEILETKASS GEQLKTDKVA ADDASSYSSD SDYFMNGPKK 180 SDSDISLEGS LRNTNSFRNG DDLGVKEGRS KYELRKSKRV LPCY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_27164.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437508.1	1e-125	PREDICTED: zinc finger protein ZAT1-like
TrEMBL	A0A3P6EXW0	1e-100	A0A3P6EXW0_BRAOL; Uncharacterized protein
STRING	Bra012452.1-P	3e-96	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1900	21	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	3e-35	C2H2-like zinc finger protein