PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_28309.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 95aa    MW: 10566 Da    PI: 10.7747
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_28309.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.63.9e-2678252127
                      NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                              +++ ++w fF++r++++a+g r++r+t  gyWkatg+  +v+s +++++g+kkt+vfy+g+ap+g+kt+W m+ey+
  Rsa1.0_28309.1_g00001.1   7 RGDAEQWLFFVPRQEREARGGRPSRTTGLGYWKATGSPGPVFSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYK 82 
                              556789*********************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.671195IPR003441NAC domain
SuperFamilySSF1019416.02E-26688IPR003441NAC domain
PfamPF023651.9E-111282IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
LAGERCRGDA EQWLFFVPRQ EREARGGRPS RTTGLGYWKA TGSPGPVFSP DNRVIGVKKT  60
MVFYTGKAPT GRKTKWKMNE YKGIDETASA STIPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-2148262139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_28309.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437066.12e-63PREDICTED: putative NAC domain-containing protein 61
SwissprotQ9M2902e-59NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLA0A078FA687e-62A0A078FA68_BRANA; BnaC03g54890D protein
TrEMBLA0A397YZT94e-61A0A397YZT9_BRACM; Uncharacterized protein
TrEMBLM4DSE94e-61M4DSE9_BRARP; Uncharacterized protein
STRINGBra019442.1-P6e-62(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.19e-62NAC domain containing protein 61