PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_30010.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 92aa    MW: 10109.5 Da    PI: 9.3853
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_30010.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000144365123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++Cp C ++F++   L  H r+H
  Rsa1.0_30010.1_g00001.1 43 HECPVCLRVFKSGQALGGHKRSH 65
                             79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.34E-54067No hitNo description
PfamPF139121.9E-134265IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0164365IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
KRVLPCYDSD SCVDTDNKIH RSSDSKSPMV KKANGANKSS KVHECPVCLR VFKSGQALGG  60
HKRSHFIGHK IKHKAAADMP IDLNLPAQDI DE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_30010.1_g00001.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437508.18e-59PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A3P6EXW02e-38A0A3P6EXW0_BRAOL; Uncharacterized protein
STRINGBo5g042740.12e-32(Brassica oleracea)
STRINGXP_006415935.14e-32(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-29C2H2-like zinc finger protein