PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_30273.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 87aa    MW: 9738.95 Da    PI: 4.4342
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_30273.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.2e-161387181
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                       B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81
                             ffkv+   + ++s  + +p +f e+ + +   ++t +l+   g +W+v +  +k ++  ++t+GW++F+++++Lk+g+f++
  Rsa1.0_30273.1_g00001.1 13 FFKVF--LSETASESMAIPMSFSEHLQDP--LPQTAKLQGIGGGVWTVSF--KKIRDCAYFTSGWSKFAEDHELKDGEFLT 87
                             89999..666777779******9655655..899****************..99998899*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-19787IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-18986IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.3651187IPR003340B3 DNA binding domain
CDDcd100178.82E-171187No hitNo description
SMARTSM010193.9E-51385IPR003340B3 DNA binding domain
PfamPF023621.8E-141387IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSGSEEDVDL PRFFKVFLSE TASESMAIPM SFSEHLQDPL PQTAKLQGIG GGVWTVSFKK  60
IRDCAYFTSG WSKFAEDHEL KDGEFLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-15386184At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_30273.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892221e-76AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442734.13e-57PREDICTED: B3 domain-containing protein REM20-like isoform X1
RefseqXP_018442735.13e-57PREDICTED: B3 domain-containing protein REM20-like isoform X2
SwissprotQ8LAV51e-31REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A078I9I23e-54A0A078I9I2_BRANA; BnaC03g16210D protein
TrEMBLA0A0D3B4185e-54A0A0D3B418_BRAOL; Uncharacterized protein
TrEMBLA0A0D3CTK87e-54A0A0D3CTK8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H7B47e-54A0A3P6H7B4_BRAOL; Uncharacterized protein
STRINGBo3g023970.19e-55(Brassica oleracea)
STRINGBo6g067300.11e-54(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.15e-34B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]