PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_30668.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 220aa MW: 24539.4 Da PI: 4.8783

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_30668.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.9	2e-23	1	69	60	129
NAM 60 fFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 fF++r kky++g ++nr+t+sgyWk+tgkd++v+ ++e+vg +tL+f+ g++p+ge+tdWv+heyrle Rsa1.0_30668.1_g00001.1 1 FFCPRLKKYPNGGKANRSTESGYWKTTGKDRDVTY-NDEVVGKIRTLIFHYGKTPRGERTDWVIHEYRLE 69 9********************************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.424	1	91	IPR003441	NAC domain
SuperFamily	SSF101941	2.88E-29	1	91	IPR003441	NAC domain
Pfam	PF02365	2.7E-9	1	68	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
FFCPRLKKYP NGGKANRSTE SGYWKTTGKD RDVTYNDEVV GKIRTLIFHY GKTPRGERTD 60 WVIHEYRLED RALVQRNIPQ DTYVICKLFK KKGLGPRHGS EYGAPFKDED WSDEEDIESL 120 VAIPDPGPNK VTSVVASASR SHPPEDCITR VISESCVSDV PQLTAAVLPP LASDVVAHTP 180 LSSSSSPLLE VPHAVQDDDD FYSMLDLFVV DSDESLRLDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-23	1	92	75	166	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-23	1	92	75	166	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-23	1	92	75	166	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-23	1	92	75	166	NO APICAL MERISTEM PROTEIN
4dul_A	7e-23	1	92	75	166	NAC domain-containing protein 19
4dul_B	7e-23	1	92	75	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_30668.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF738277	0.0	KF738277.1 Brassica napus NAC transcription factor 103 (NAC103.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018488474.1	1e-157	PREDICTED: NAC domain-containing protein 82 isoform X1
Swissprot	Q9FY82	4e-70	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A397Z781	1e-138	A0A397Z781_BRACM; Uncharacterized protein
STRING	Bra024263.1-P	1e-138	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3692	25	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	2e-93	NAC domain containing protein 103

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]