PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_31010.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 107aa    MW: 12508.2 Da    PI: 9.1092
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_31010.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.62.6e-2146107162
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkryk 62 
                              +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km ++gf rs++qCk+kw+nl +ryk
  Rsa1.0_31010.1_g00001.1  46 QWSIEETRELLGIREELDQTFMETKRNKLLWEVVAAKMVDKGFARSAEQCKSKWKNLVTRYK 107
                              7************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.4E-545103IPR009057Homeodomain-like
CDDcd122032.81E-2445107No hitNo description
Gene3DG3DSA:1.10.10.607.0E-546102IPR009057Homeodomain-like
PfamPF138375.3E-1746107No hitNo description
PROSITE profilePS500908.03747103IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MDRSNPFYHR DHQLYHLIQQ QQLSLPPQST TAAMDSGVGG GERIPQWSIE ETRELLGIRE  60
ELDQTFMETK RNKLLWEVVA AKMVDKGFAR SAEQCKSKWK NLVTRYK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_31010.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893621e-144AC189362.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475903.14e-75PREDICTED: trihelix transcription factor GT-3a-like
SwissprotQ9SDW04e-40TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A078FGM71e-55A0A078FGM7_BRANA; BnaA03g00390D protein
TrEMBLA0A0D3AZB11e-55A0A0D3AZB1_BRAOL; Uncharacterized protein
TrEMBLA0A3P5ZCN21e-55A0A3P5ZCN2_BRACM; Uncharacterized protein
TrEMBLA0A3P5ZXC61e-55A0A3P5ZXC6_BRAOL; Uncharacterized protein
STRINGBo3g001460.12e-56(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3772022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.15e-40Trihelix family protein