PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_33205.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 162aa    MW: 16883.8 Da    PI: 7.9291
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_33205.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00072830123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C  C+ksF +   L  H  +H
  Rsa1.0_33205.1_g00001.1  8 HVCVTCNKSFASYQALGGHRASH 30
                             79**********99999998887 PP
2zf-C2H210.80.00157796120
                             EEETTTTEEESSHHHHHHHH CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                             ++C++C +sFs+   L  H 
  Rsa1.0_33205.1_g00001.1 77 HVCTICQRSFSTGQALGGHK 96
                             79*********988887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.31E-8730No hitNo description
PROSITE profilePS501579.411835IPR007087Zinc finger, C2H2
PfamPF139121.1E-10832IPR007087Zinc finger, C2H2
SMARTSM003550.55830IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SuperFamilySSF576676.31E-87299No hitNo description
PfamPF139122.8E-1277101IPR007087Zinc finger, C2H2
PROSITE profilePS501579.2867799IPR007087Zinc finger, C2H2
SMARTSM003550.247799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
GGGAREKHVC VTCNKSFASY QALGGHRASH NKVKISENHQ ARANGEALLL GTEAIVTGLA  60
SAQGPNTSLS ISNKGDHVCT ICQRSFSTGQ ALGGHKRCHW PGPASNEAAT APGPVSSEAA  120
TAAPTAPEAG SSSQVVETVQ EVKRLKRKFL EFDLNELPPN EE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_33205.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411941e-101AC241194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH124P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455488.11e-102PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A0D3EBN61e-95A0A0D3EBN6_BRAOL; Uncharacterized protein
TrEMBLA0A3N6TH392e-99A0A3N6TH39_BRACR; Uncharacterized protein (Fragment)
TrEMBLA0A3P6E2D71e-95A0A3P6E2D7_BRAOL; Uncharacterized protein
STRINGBo9g123640.12e-96(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-59C2H2 family protein