PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_34622.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 190aa MW: 21562.8 Da PI: 4.7475

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_34622.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.1e-19	3	56	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Rsa1.0_34622.1_g00001.1 3 KKRRLSVNQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 56 566899***********************************************9 PP
2	HD-ZIP_I/II	131.2	3.9e-42	2	94	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++++L Rsa1.0_34622.1_g00001.1 2 EKKRRLSVNQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNDSLL 89 69*************************************************************************************9 PP HD-ZIP_I/II 89 eelke 93 +e+++ Rsa1.0_34622.1_g00001.1 90 QEISK 94 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.718	1	58	IPR001356	Homeobox domain
SMART	SM00389	2.6E-17	1	62	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.34E-18	3	67	IPR009057	Homeodomain-like
Pfam	PF00046	3.6E-16	3	56	IPR001356	Homeobox domain
CDD	cd00086	3.07E-14	3	59	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.3E-20	5	65	IPR009057	Homeodomain-like
PRINTS	PR00031	4.0E-6	29	38	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	33	56	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.0E-6	38	54	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.1E-17	58	99	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
AEKKRRLSVN QVKALEKNFE LENKLEPERK VKLAQELGLQ PRQVAVWFQN RRARWKTKQL 60 EKDYGVLKTQ YDSLRHNFDS LRRDNDSLLQ EISKLKAKLN GEEEEDDDEE DNNLATMESD 120 VSVKEEEVSL PEKITEPPSS PPQLLEHSDS FNYRSFTDLR DLLPLKAAAS SVAAAGSSDS 180 SEGSSSNVTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	58	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:12065416}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_34622.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:12065416, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY336103	0.0	AY336103.1 Brassica napus homeodomain-leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018441266.1	1e-133	PREDICTED: homeobox-leucine zipper protein ATHB-6
Swissprot	P46668	3e-95	ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBL	A0A0D3DW12	1e-100	A0A0D3DW12_BRAOL; Uncharacterized protein
STRING	Bo8g101130.1	1e-101	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	6e-72	homeobox protein 6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]