PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_34969.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 109aa MW: 12856.9 Da PI: 10.1269

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_34969.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136	2.5e-42	3	96	36	129
NAM 36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdW 121 e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ kg lvg+kktLvfy+grap+gekt+W Rsa1.0_34969.1_g00001.1 3 EADLNKCEPWDLPKMAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGCLVGMKKTLVFYRGRAPRGEKTNW 88 78*********9999999***********************************9********************** PP NAM 122 vmheyrle 129 vmheyrle Rsa1.0_34969.1_g00001.1 89 VMHEYRLE 96 ****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.04	1	109	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-42	3	97	IPR003441	NAC domain
Pfam	PF02365	3.5E-18	11	95	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MGEADLNKCE PWDLPKMAKM GEKEFYFFCQ RDRKYPTGMR TNRATESGYW KATGKDKEIF 60 KGKGCLVGMK KTLVFYRGRA PRGEKTNWVM HEYRLEGIYS YHNLPKTAR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-36	1	95	49	142	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-36	1	95	49	142	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-36	1	95	49	142	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-36	1	95	49	142	NO APICAL MERISTEM PROTEIN
3swm_A	5e-36	1	95	52	145	NAC domain-containing protein 19
3swm_B	5e-36	1	95	52	145	NAC domain-containing protein 19
3swm_C	5e-36	1	95	52	145	NAC domain-containing protein 19
3swm_D	5e-36	1	95	52	145	NAC domain-containing protein 19
3swp_A	5e-36	1	95	52	145	NAC domain-containing protein 19
3swp_B	5e-36	1	95	52	145	NAC domain-containing protein 19
3swp_C	5e-36	1	95	52	145	NAC domain-containing protein 19
3swp_D	5e-36	1	95	52	145	NAC domain-containing protein 19
4dul_A	4e-36	1	95	49	142	NAC domain-containing protein 19
4dul_B	4e-36	1	95	49	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_34969.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP641357	1e-135	KP641357.1 Brassica napus NAC transcription factor 87.1 (NAC87.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018473507.1	4e-77	PREDICTED: NAC domain-containing protein 79-like
Swissprot	Q9FK44	2e-73	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0D3B1S3	1e-74	A0A0D3B1S3_BRAOL; Uncharacterized protein
STRING	Bo3g013050.1	2e-75	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	8e-76	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]