PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_35266.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 130aa    MW: 14354.7 Da    PI: 5.9849
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_35266.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.22.4e-11105126122
                              ---SS-EEEEEEE--TT-SS-E CS
                     WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                              ldDgy+WrKYGqK+vk++ +pr
  Rsa1.0_35266.1_g00001.1 105 LDDGYRWRKYGQKSVKNNGHPR 126
                              59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-1292127IPR003657WRKY domain
SuperFamilySSF1182908.11E-1097128IPR003657WRKY domain
PROSITE profilePS5081113.127100130IPR003657WRKY domain
SMARTSM007740.0058105130IPR003657WRKY domain
PfamPF031068.7E-8106129IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MEGTDNTNSM LTLEEGENNH FSSFDDKQLM MMVPSLMFSG DMGTSSSCSP ASFHMSAQPE  60
NFQGGGGGEA MEMGGLNDHN NKGKGKRSSA LQRIAFHTRS DDDVLDDGYR WRKYGQKSVK  120
NNGHPRYSFT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_35266.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300630.0KF430063.1 Brassica rapa WRKY transcription factor 56 (WRKY56) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455366.15e-90PREDICTED: probable WRKY transcription factor 56
SwissprotQ8VWQ44e-56WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A0D3E4E94e-74A0A0D3E4E9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E4Z44e-74A0A3P6E4Z4_BRAOL; Uncharacterized protein
STRINGBo9g033920.17e-75(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-58WRKY DNA-binding protein 56