PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_35363.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 117aa    MW: 13911 Da    PI: 10.8245
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_35363.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-1557104148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg W +eEd +l  +++ +G g+W  I+r  g++R +k+c++rw +yl
  Rsa1.0_35363.1_g00001.1  57 RGLWKPEEDMILRSYIETHGEGNWGDISRNSGLKRGGKSCRLRWKNYL 104
                              788*****************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.21152108IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-2153114IPR009057Homeodomain-like
SuperFamilySSF466892.69E-1754114IPR009057Homeodomain-like
SMARTSM007173.1E-1356106IPR001005SANT/Myb domain
PfamPF002492.2E-1357104IPR001005SANT/Myb domain
CDDcd001677.74E-1060104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
ISPHMFELKL ETRARYAHLI AKPNTHLTFK PWRGGEKKER MEKKREEEER KSHVVKRGLW  60
KPEEDMILRS YIETHGEGNW GDISRNSGLK RGGKSCRLRW KNYLRPNIKR GGMSPQE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_35363.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468290.12e-76PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF72e-37MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A078JF763e-38A0A078JF76_BRANA; BnaC02g44890D protein
TrEMBLA0A3P6DES43e-38A0A3P6DES4_BRAOL; Uncharacterized protein
STRINGBo2g047590.19e-39(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-38myb domain protein 82