PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_36663.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 172aa    MW: 18979.9 Da    PI: 8.6728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_36663.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.4e-1864153697
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                              ++s++lk + l+l   f+ ++g++  +s +++l++e+g +W++ l+   +   ++ + GW+ F++ ng+k+gD+++Fkl+g ++ +
  Rsa1.0_36663.1_g00001.1  64 VTSNSLKIDKLCLGQAFVIANGLDRGCS-EMVLKNEWGGKWSLALRCYESAYPTYVGPGWRTFCQVNGIKAGDSFMFKLVG-NGNK 147
                              6899999*****************8887.****************66555555999************************9.5666 PP

                              .EEEEE CS
                       B3  92 lvvkvf 97 
                              +v+ ++
  Rsa1.0_36663.1_g00001.1 148 PVLLLC 153
                              777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.458142IPR003340B3 DNA binding domain
PROSITE profilePS5086312.8359155IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-1559155IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-1660156IPR003340B3 DNA binding domain
PfamPF023621.7E-1664153IPR003340B3 DNA binding domain
CDDcd100173.50E-1566153No hitNo description
SuperFamilySSF1019361.06E-1567157IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MHTFIRPGWR RFCAENKMSH GHYTLKLVQK SGPPVIRLCG QVHNSPKPVS QSSLNPYCCY  60
VGCVTSNSLK IDKLCLGQAF VIANGLDRGC SEMVLKNEWG GKWSLALRCY ESAYPTYVGP  120
GWRTFCQVNG IKAGDSFMFK LVGNGNKPVL LLCTSKTPLE CQEESSCSDT SS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_36663.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6085632e-92AB608563.1 Raphanus sativus DNA, microsatellite locus RsSR037, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442036.16e-99PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-48REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A397YJB91e-89A0A397YJB9_BRACM; Uncharacterized protein
STRINGBra012445.1-P4e-87(Brassica rapa)
STRINGBo7g054160.13e-90(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.16e-51B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]