PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_37108.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 75aa MW: 8441.33 Da PI: 8.2384

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_37108.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	42.3	2.4e-13	7	29	36	58
CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58 +py+heSRh hA++RpRg+gGrF Rsa1.0_37108.1_g00001.1 7 QPYMHESRHLHAINRPRGCGGRF 29 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	18.983	1	32	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.0E-10	7	29	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
LIYLCFQPYM HESRHLHAIN RPRGCGGRFL NAKKKNGARK EKEEEEEEAT SDENTSEASS 60 SLRSEKSAMA ANGRS

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_37108.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FN397617	4e-73	FN397617.1 Raphanus sativus Rfo genomic region from maintainer genotype.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013692494.1	4e-31	nuclear transcription factor Y subunit A-4
Refseq	XP_013692495.1	4e-31	nuclear transcription factor Y subunit A-4
Refseq	XP_013692496.1	4e-31	nuclear transcription factor Y subunit A-4
Swissprot	Q8VY64	4e-30	NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBL	A0A3P6BXA1	8e-30	A0A3P6BXA1_BRAOL; Uncharacterized protein
STRING	Bo4g039370.1	9e-30	(Brassica oleracea)
STRING	XP_006410622.1	9e-30	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34720.1	3e-12	nuclear factor Y, subunit A4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]