PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_37341.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 111aa    MW: 12095 Da    PI: 10.698
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_37341.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF391.1e-121453140
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                             k+ie+ks + vtfskRr g+  KA  L+v+ +a++a++  
  Rsa1.0_37341.1_g00001.1 14 KKIEDKSSKAVTFSKRRDGLYSKAAQLCVMGEAQIAILAT 53
                             68**********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.928657IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-10666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-15780IPR002100Transcription factor, MADS-box
CDDcd002663.65E-18785No hitNo description
PRINTSPR004042.7E-8828IPR002100Transcription factor, MADS-box
PfamPF003193.0E-121556IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-82843IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MVKRGGTKRK AVLKKIEDKS SKAVTFSKRR DGLYSKAAQL CVMGEAQIAI LATPSSSNSN  60
VPFFSFGHSS VDSLVSAYLS GQRPVRVPEE SKKMREDIGI CMARKELGLS N
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_37341.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448804.12e-73PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6333e-32AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A078CKG78e-60A0A078CKG7_BRANA; BnaC08g02610D protein
STRINGBra014217.1-P3e-59(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.14e-38M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]