PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_39481.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 107aa    MW: 12012.1 Da    PI: 7.5562
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_39481.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA28.42.3e-0988107120
                     GATA   1 CsnCgttkTplWRrgpdgnk 20 
                              C++C tt+TplWR+gp g+k
  Rsa1.0_39481.1_g00001.1  88 CASCDTTSTPLWRNGPKGPK 107
                              ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.26482107IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-582106No hitNo description
Gene3DG3DSA:3.30.50.103.5E-783105IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-688107IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MMEYQTNANF SMFYDQDHPH YDYDDLSSST SVDCTLSLGT PSTRVNEHRR FSSANSNNLS  60
GDFFFHGGSA KTMSYKKSGS EHNLPRRCAS CDTTSTPLWR NGPKGPK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_39481.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454800.12e-74PREDICTED: GATA transcription factor 20-like
SwissprotQ9ZPX06e-55GAT20_ARATH; GATA transcription factor 20
TrEMBLA0A078IMK83e-66A0A078IMK8_BRANA; BnaC09g09760D protein
TrEMBLA0A0D3E3A53e-66A0A0D3E3A5_BRAOL; Uncharacterized protein
STRINGBo9g026020.16e-67(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-51GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]