PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_41043.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 114aa MW: 13260.3 Da PI: 9.8216

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_41043.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.5	3.9e-07	1	15	42	56
HHHHHHHHHHHHHHH CS Homeobox 42 rqVkvWFqNrRakek 56 rqV vWFqNrRa+ k Rsa1.0_41043.1_g00001.1 1 RQVEVWFQNRRARTK 15 7************98 PP
2	HD-ZIP_I/II	69.5	6.9e-23	1	50	41	91
HD-ZIP_I/II 41 rqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke eLr +l Rsa1.0_41043.1_g00001.1 1 RQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELR-TL 50 9**********************************************9.54 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	0.0014	1	18	No hit	No description
Pfam	PF00046	1.5E-4	1	15	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.7E-6	1	26	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-6	1	20	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.236	1	17	IPR001356	Homeobox domain
Pfam	PF02183	9.1E-9	17	50	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.1E-23	17	60	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
RQVEVWFQNR RARTKLKQTE VDCEYLKRCV EKLTEENRRL QKEAMELRTL KLSPQFYGQM 60 TPPTTLIMCP SCERVAGPSS NHQHNQRPVP INPWVACAGQ VAHGLNFEAL RPRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	17	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269\|PubMed:12492842}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_41043.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269\|PubMed:12492842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC183494	1e-141	AC183494.1 Brassica oleracea Contig C, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018461133.1	2e-80	PREDICTED: homeobox-leucine zipper protein HAT2
Swissprot	P46601	1e-77	HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBL	A0A0D3D9U7	4e-78	A0A0D3D9U7_BRAOL; Uncharacterized protein
TrEMBL	Q2A9S3	4e-78	Q2A9S3_BRAOL; Homeobox-leucine zipper protein, putative
STRING	Bo7g077560.1	6e-79	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1563	26	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47370.1	5e-80	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697]