PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_41853.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 176aa    MW: 20346 Da    PI: 4.5606
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_41853.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS151.48.3e-474176198373
                     GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                               +Eal+Vn++++l +++de+++  s r+ +L++++sl+P++v+++e++ad++se++++r+ +a++y++  fd++++ +   se+r+
  Rsa1.0_41853.1_g00001.1   4 YNEALVVNCHMMLRYIPDETLTPLSLRNVFLNQLRSLNPTIVTLIEEDADLTSENLVARVRSAFNYFWIPFDTTDTFV---SEQRR 86 
                              58***************************************************************************7...9**** PP

                     GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                               +E+e + ++i+nvva+eg er+er+et+++W er+++  F+ v++se+a+++ k++l +++ ++g++ +++++slvl+Wk++++v
  Rsa1.0_41853.1_g00001.1  87 LYEAE-VIWKIENVVAKEGVERVERTETKGRWLERMRDNEFGGVRVSEEAVSELKAMLGEHAvGWGMKKDDDDESLVLTWKGHSVV 171
                              *****.889***************************************************************************** PP

                     GRAS 369 svSaW 373
                              ++++W
  Rsa1.0_41853.1_g00001.1 172 FATVW 176
                              ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.191156IPR005202Transcription factor GRAS
PfamPF035142.9E-444176IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
STSYNEALVV NCHMMLRYIP DETLTPLSLR NVFLNQLRSL NPTIVTLIEE DADLTSENLV  60
ARVRSAFNYF WIPFDTTDTF VSEQRRLYEA EVIWKIENVV AKEGVERVER TETKGRWLER  120
MRDNEFGGVR VSEEAVSELK AMLGEHAVGW GMKKDDDDES LVLTWKGHSV VFATVW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-165176240418Protein SHORT-ROOT
5b3h_E2e-165176240418Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_41853.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437964.11e-126PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-101SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A397XZB31e-117A0A397XZB3_BRACM; Uncharacterized protein
STRINGBra036041.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2741133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-103GRAS family protein