PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_42535.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 145aa    MW: 16532.4 Da    PI: 6.7836
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_42535.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.71.3e-07121109129
                      NAM 109 ykgrapkgektdWvmheyrle 129
                              ykgrapkgek++Wvmheyrle
  Rsa1.0_42535.1_g00001.1   1 YKGRAPKGEKSNWVMHEYRLE 21 
                              89*****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-12141IPR003441NAC domain
PROSITE profilePS5100519.218141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
YKGRAPKGEK SNWVMHEYRL ENKQPFKSAK EEWVVCRVFE KSTATKKPQE QQPQSSFGSP  60
CDANSSMANE FEDIEIQNMN TNSSTIDYNH IHQYSQNGTY YSEDNTIRKA GLNMNMATDI  120
PSWSTTSLLG QPLSPINSLL LKAFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_42535.1_g00001.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266581e-55AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24.
GenBankCP0026861e-55CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492387.11e-104PREDICTED: NAC domain-containing protein 92-like
TrEMBLA0A3P6BCY68e-85A0A3P6BCY6_BRAOL; Uncharacterized protein
STRINGBra001705.1-P1e-84(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.19e-69NAC domain containing protein 58