PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_42564.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 108aa    MW: 11770.6 Da    PI: 11.521
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_42564.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.85.1e-291565252
                   RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                             ek++s + l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++
  Rsa1.0_42564.1_g00001.1 15 EKSVSSSLLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 65
                             7999*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.745485IPR003035RWP-RK domain
PfamPF020429.1E-281865IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MSKARTPEKK RNSTEKSVSS SLLQQHFSGS LKDAAKSLGV CPTTLKRICR QHGIMRWPSR  60
KINKVNRSLR KIQTVLDSVQ GVEGGLKFDS TTGGFVAVGP FISPPSSN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_42564.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434817.17e-67PREDICTED: protein NLP8-like
SwissprotQ9M1B02e-54NLP9_ARATH; Protein NLP9
TrEMBLA0A178VN397e-56A0A178VN39_ARATH; Uncharacterized protein
TrEMBLR0FUG67e-56R0FUG6_9BRAS; Uncharacterized protein
STRINGCagra.3706s0034.1.p1e-56(Capsella grandiflora)
STRINGXP_006293639.11e-56(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-56Nin-like family protein