PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_42643.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 58aa    MW: 6843.65 Da    PI: 4.5721
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_42643.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-07427226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                             k  lC ff + G+C+ G +CkF+H+
  Rsa1.0_42643.1_g00001.1  4 KSILCEFFKA-GQCQKGFKCKFSHD 27
                             6779**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.272229IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-6428IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5427IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
VDPKSILCEF FKAGQCQKGF KCKFSHDLNI QRKGEKIDIY SDKRDEDGDM EEWDQETL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_42643.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895343e-51AC189534.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001J06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102048.14e-35PREDICTED: zinc finger CCCH domain-containing protein 21
RefseqXP_013593709.15e-35PREDICTED: zinc finger CCCH domain-containing protein 21
RefseqXP_022564145.15e-37zinc finger CCCH domain-containing protein 21-like
RefseqXP_022564146.15e-37zinc finger CCCH domain-containing protein 21-like
SwissprotQ9SK741e-34C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLA0A0D3D2C11e-33A0A0D3D2C1_BRAOL; Uncharacterized protein
TrEMBLA0A397YIE31e-33A0A397YIE3_BRACM; Uncharacterized protein
TrEMBLA0A3N6T6711e-33A0A3N6T671_BRACR; Uncharacterized protein
TrEMBLA0A3P6BGG36e-34A0A3P6BGG3_BRACM; Uncharacterized protein (Fragment)
TrEMBLA0A3P6EML01e-33A0A3P6EML0_BRAOL; Uncharacterized protein
TrEMBLM4F5V31e-33M4F5V3_BRARP; Uncharacterized protein
STRINGBra036459.1-P2e-34(Brassica rapa)
STRINGBo7g003780.12e-34(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3230322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.15e-37C3H family protein