PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_44548.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 71aa    MW: 8177.3 Da    PI: 8.8196
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_44548.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72e-32563360
                             -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60
                             D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eHnh+k
  Rsa1.0_44548.1_g00001.1  5 DDYSWRKYGQKPIKGSPYPRGYYKCSSIrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 63
                             99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.767164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-33163IPR003657WRKY domain
SuperFamilySSF1182906.02E-28263IPR003657WRKY domain
SMARTSM007741.6E-36363IPR003657WRKY domain
PfamPF031061.1E-27562IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
DIPPDDYSWR KYGQKPIKGS PYPRGYYKCS SIRGCPARKH VERCLEDPAM LIVTYEAEHN  60
HPKLPSQTVT T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-221611271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_44548.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300392e-99KF430039.1 Brassica rapa WRKY transcription factor 21 (WRKY21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630723.12e-47PREDICTED: probable WRKY transcription factor 21
RefseqXP_013683247.12e-47probable WRKY transcription factor 21
RefseqXP_013704350.12e-47probable WRKY transcription factor 21
SwissprotO043362e-46WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A3N6PQX42e-46A0A3N6PQX4_BRACR; Uncharacterized protein (Fragment)
TrEMBLA0A3P6A4Z94e-46A0A3P6A4Z9_BRAOL; Uncharacterized protein
STRINGBo3g024750.19e-47(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.19e-49WRKY DNA-binding protein 21