PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_45292.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 128aa    MW: 13962.8 Da    PI: 11.0066
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_45292.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.87.1e-1968102135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Rsa1.0_45292.1_g00001.1  68 CTHCASDKTPQWRTGPLGPKTLCNACGVRFKSGRL 102
                              *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-1562112IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-1566126No hitNo description
Gene3DG3DSA:3.30.50.104.6E-1466100IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.1876698IPR000679Zinc finger, GATA-type
CDDcd002021.67E-1267114No hitNo description
PfamPF003209.4E-1768102IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406893IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MTSLKTETSK PRSKRSKPPA AFGTWAPMSE PDQNIHVPGR SKPKKEHSGG GGRHQSSAET  60
AEGGLRRCTH CASDKTPQWR TGPLGPKTLC NACGVRFKSG RLVPEYRPAS SPTFVLTQHS  120
NSHRKVME
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_45292.1_g00001.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935902e-66AB493590.1 Arabidopsis thaliana At2g45050 mRNA for hypothetical protein, partial cds, clone: RAAt2g45050.
GenBankAK3171342e-66AK317134.1 Arabidopsis thaliana AT2G45050 mRNA, complete cds, clone: RAFL21-72-C19.
GenBankAY0807452e-66AY080745.1 Arabidopsis thaliana At2g45050 mRNA sequence.
GenBankBT0009212e-66BT000921.1 Arabidopsis thaliana clone C105099 putative GATA-type zinc finger transcription factor (At2g45050) mRNA, complete cds.
GenBankCP0026852e-66CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankY136492e-66Y13649.1 Arabidopsis thaliana mRNA for GATA transcription factor 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556119.13e-78GATA transcription factor 2-like isoform X1
RefseqXP_022556120.12e-78GATA transcription factor 2-like isoform X2
SwissprotO497416e-58GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A3P6CRW62e-76A0A3P6CRW6_BRAOL; Uncharacterized protein
STRINGBo4g195320.17e-77(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-60GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]