PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_45845.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 139aa    MW: 15603.9 Da    PI: 10.029
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_45845.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK96.61.6e-301666252
                   RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                             ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++
  Rsa1.0_45845.1_g00001.1 16 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 66
                             89***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.143186IPR003035RWP-RK domain
PfamPF020421.6E-281866IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
EPSGARKYEK KKSSTEKNVS LNVLQQYFSG SLKDAAKSLG VCPTTLKRIC RQHGIMRWPS  60
RKINKVNRSL RKIQTVLDSV QGVEGGLKFD SVTGEFIAVG SLTQEFDTQK SLPLGHDDAF  120
VRRQCDMDED MSLELLKVK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_45845.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892971e-108AC189297.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB027O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442478.12e-91PREDICTED: protein NLP9
SwissprotQ9M1B04e-73NLP9_ARATH; Protein NLP9
TrEMBLA0A0D3CUT92e-81A0A0D3CUT9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BTF53e-81A0A3P6BTF5_BRACM; Uncharacterized protein
STRINGBo6g076560.14e-82(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.22e-75Nin-like family protein