PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_46380.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 135aa MW: 15554.3 Da PI: 8.2623

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_46380.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.1	3.9e-13	25	77	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r rr+ +NRe+ArrsR RK+ ++eL v+ L +eN++ ++l++ ++ + Rsa1.0_46380.1_g00001.1 25 RRKRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQILDKLNKASDSND 77 699************************************99988887776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.9E-11	21	85	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.254	23	71	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-10	24	76	No hit	No description
Pfam	PF00170	3.9E-11	25	82	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-12	25	74	No hit	No description
CDD	cd14702	6.32E-16	26	73	No hit	No description
PROSITE pattern	PS00036	0	28	43	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
LQSPTSHNST TSDEATEETF VINERRKRRM VSNRESARRS RMRKQRHLDE LLSQVAWLRS 60 ENHQILDKLN KASDSNDLVL QENLTLKEEN LELRQVITSM KKLGGAEGGR TSLHGRYCSS 120 SLDHDLDQDF SCITK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	44	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_46380.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232554	0.0	AC232554.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018475161.1	1e-94	PREDICTED: basic leucine zipper 43-like
Refseq	XP_018475182.1	1e-94	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	8e-31	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A0D3B1C9	1e-85	A0A0D3B1C9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6AG93	1e-85	A0A3P6AG93_BRAOL; Uncharacterized protein
STRING	Bo3g010620.1	2e-86	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10632	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15830.1	1e-60	basic leucine-zipper 3

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]