PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_47432.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C3H

Protein Properties

Length: 114aa MW: 12257.7 Da PI: 9.4686

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_47432.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.3	6.5e-09	1	16	11	26
GTS--TTTTT-SS-SS CS zf-CCCH 11 rtGtCkyGdrCkFaHg 26 rtG+Ck+G++CkF+H+ Rsa1.0_47432.1_g00001.1 1 RTGQCKFGSTCKFHHP 16 8**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00642	1.5E-6	1	16	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.46	1	18	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
RTGQCKFGST CKFHHPVPPG DHQAPSQHPL PTSPPAIYPS QQFGVVVPRP YVTYSQMVLS 60 PGMVGWNPYQ PSTGTQPSPV YGTKPLSPSA PAYQSGSPSS NKEQSFPQRP GQPE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_47432.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018463879.1	7e-74	PREDICTED: zinc finger CCCH domain-containing protein 58-like
Refseq	XP_018463880.1	7e-74	PREDICTED: zinc finger CCCH domain-containing protein 58-like
Swissprot	Q6NPN3	1e-31	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBL	A0A3P6A222	4e-44	A0A3P6A222_BRACM; Uncharacterized protein
STRING	Bo3g013210.1	6e-43	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	6e-34	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]