PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_47639.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 122aa MW: 13771.7 Da PI: 10.0176

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_47639.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.1e-09	37	81	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P a +Kl+ ae+ e A +Y+k Lq Rsa1.0_47639.1_g00001.1 37 SIAARERRRRIADKTHELTKLIPGA-----QKLNTAEMFEAAAKYVKFLQ 81 677899****************9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-11	23	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.417	31	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-11	34	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-7	37	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	37	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
SIFPNFQVPD FPLEFKVGRG DEDRGHDTKK PSLSSQSIAA RERRRRIADK THELTKLIPG 60 AQKLNTAEMF EAAAKYVKFL QSQVGILQMM QTTTKTHISD VEIKTRVLLG SQAIQEKLST 120 DE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_47639.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018466572.1	1e-69	PREDICTED: transcription factor bHLH53-like
Swissprot	Q84RD0	1e-44	BH053_ARATH; Transcription factor bHLH53
TrEMBL	A0A078JNX8	1e-61	A0A078JNX8_BRANA; BnaAnng24240D protein (Fragment)
TrEMBL	A0A397ZC29	3e-61	A0A397ZC29_BRACM; Uncharacterized protein
TrEMBL	M4CMF1	3e-61	M4CMF1_BRARP; Uncharacterized protein
STRING	Bra005389.1-P	5e-62	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	5e-46	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]